And yeah, open info is good info.
If you are porting, pay attention to the short-side floor area. Be gentle and smoothly reshape it to take the harsh turn out of it (this applies to both intake and exhaust sides). Teardrop the intake port splitter (think leading edge of an airfoil) to improve transition from the throat to the valve. As to opening the bowl area directly above the valve seat, DO NOT go more than 90%, as you want meat there for a good (minimum 3-angle, but for all-out, 5-angle) valve job. Believe it or not, the most positive difference in flow will be made by just that valve job. On the exhaust side, raise the port roof slightly (to match whatever header/manifold you use) and fill the floor the same amount (air flow wants to stick to the roof, and has been known to stall/revert in the lower right corner). This, in effect, is raising the port for a more direct/smoother line out for the airflow to follow. I have done this on 4.6L DOHC heads with success.
As to unshrouding the valves; very good idea but you have to keep the cylinder bore (not the head gasket bore diameter) in mind. That will dictate how much you can potentially remove to unshroud. Pay attention to the shape of your cut, as it shouldn't be harsh. Any removed material in the chamber will drop compression (so keep in mind how many CC's you remove). Some can be regained by shaving the head or using higher compression pistons.
Again, unless you really want to slow incoming air, DO NOT port-match the intake unless you have opened up the upper intake and this will merely align/keep the port velocity moving. Unless your engine has been modded for more low-end torque, losing any velocity down low will make the car very sluggish (even with a larger throttle body) as port velocity isn't aiding in cylinder-filling. The trick is to experiment with throttle body size until you find the one that doesn't kill low-end and hangs on further into the rpm band (just like carburation, there is too big).
What are your overall plans/goals for the engine? Will it see boost? Will you be revving the piss out of it all the time? Auto or stick car? Final drive ratio and tire size? Believe it or not, this all needs to be considered when modifying the engine.
TQ x RPM /5252 = HP
Any change to torque has a greater effect oh HP than RPM does. Higher RPM moves the HP band up.